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Genotyping-by-Sequencing Reveals Fine-Scale Differentiation in Populations of Pseudoperonospora humuli

    Affiliations
    Authors and Affiliations
    • David H. Gent1
    • Nanci Adair1
    • Brian J. Knaus2
    • Niklaus J. Grünwald3
    1. 1Forage Seed and Cereal Research Unit, U.S. Department of Agriculture-Agricultural Research Service, Corvallis, OR 97331
    2. 2Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331
    3. 3U.S. Department of Agriculture-Agricultural Research Service, Horticultural Crops Research Unit, Corvallis, OR 97330

    Supplemental Material

    Supplementary Figure S1 shows violin plots illustrating depth of sequencing coverage of variant loci for all isolates/samples of Pseudoperonospora humuli.

    Supplementary Figure S2 shows a matrix plot of variants versus Pseudoperonospora humuli samples for the first 1,000 raw variants in the data set.

    Supplementary Table S1 lists the origin and purpose of isolates of Pseudoperonospora humuli and P. cubensis used in experiments.